UC Research Repository

Nau mai, haere mai, welcome to the UC Research Repository

The UC Research Repository collects, stores and makes available original research from postgraduate students, researchers and academics based at the University of Canterbury.

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Communities

Select a community to browse its collections.

  • Canterbury University Press   7
  • Faculty of Arts | Te Kaupeka Toi Tangata   2852
  • Faculty of Education | Te Kaupeka Ako   1366
  • Faculty of Engineering | Te Kaupeka Pūhanga   8177
  • Faculty of Health   597
  • Faculty of Law | Te Kaupeka Ture   590
  • Faculty of Science | Te Kaupeka Pūtaiao   6694
  • Non-Academic Departments and External   33
  • UC Journals and Conferences   946 Items from Journals and Conferences hosted by the University of Canterbury
  • UC Business School | Te Kura Umanga   1326
  • UC Research Centres   1353 University of Canterbury Research Centres

Recent Submissions

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President Drake announces the introduction of UC Library Search

Wednesday, July 28, 2021

Dear Colleagues:

A transformational moment for the University of California is upon us with the introduction of UC Library Search , the first truly unified discovery and borrowing enterprise system across our ten campus libraries, two regional library facilities, and the California Digital Library.

An initiative more than four years in the making, UC Library Search is exemplary of the collaborative work occurring within our university ecosystem. Charged with replacing Melvyl, which since 1981 has allowed scholars to find materials at all UC libraries, staff from across the UC system reimagined what catalog search, library content access, and management can be.

For the UC research community – from first-years to faculty – UC Library Search means faster and easier access to critical resources. In addition to aggregating search results from more than 40 million physical volumes across all campuses, the platform seamlessly connects users with digitally available journals, books and library databases. With hybrid learning and working becoming the “new normal,” UC Library Search supports remote students and researchers by allowing them to pick up circulated materials at any UC campus.

Today’s launch is but the first chapter written in what will be a long history for UC Library Search. With financial support from the Office of the President, this investment in a modern library system will allow UC to more efficiently manage the vast resources of the UC Libraries. Our libraries will continue to enhance functionality, add third-party integrations, and use aggregated analytics to make collective, data-driven decisions.

I congratulate our colleagues whose vision and dedication brought UC Library Search to fruition. Your efforts empower our University of California researchers to light the way.

Sincerely, Michael V. Drake, M.D. President

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Frequently asked questions

I'm having problems with library research for a class. where can i get help.

The  guides and tutorials page  is a great place to start.

Looking for individual guidance? Our information experts provide  research help  via email, 24/7 chat, telephone, and in person.

Want to go into more depth? Cal undergrads can sign up online for a free 30-minute  Research Advisory Service  appointment.

Where can I find information on citation styles?

The  citing sources  page gives a rundown of the major citation styles, with links to detailed guides on the APA, MLA, and Chicago formats.

I'm an alum or a member of the public. Are there any online resources I can use for research from off campus?

The guide  Freely Available Resources for Research  is an introduction to some of the many free resources for research available online.

How can I find a librarian who specializes in my subject area?

Please see our list of  subject librarians .

Can I use Zotero to save citations from UC Library Search?

When you want to capture a reference in Zotero from a library catalog such as UC Library Search :

  • After completing your search, click on the full record of the item so that it is fully displayed on the page as a single entity.
  • Open Zotero.  Three large windows will appear.  The first at the far left contains your library collections (where you create and store file folders).  The second is where individual references or "titles" are displayed.  The third is where the elements of the citation are displayed, and also offers the opportunity to annotate citations.
  • To add a citation, go to the URL box at the top of the page.  If it’s a book, you should notice a tiny blue book icon located after the URL.  Other icons appear for different media.
  • Click on that icon and the citation will automatically appear in the far right field of Zotero.

Visit the  Zotero site  for documentation, support, and tutorials. Or check out the Zotero Library Guide .

More information

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Digital Collections provides online access to UC Berkeley Library’s rare and unique digitized special collections, books, manuscripts, images, photographs, newspapers, and more.

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Visit our Course reserves page for instructions regarding the Library’s service that provides students with free versions of materials required for their classes.

Search and browse our list of databases , where you can find collections of articles, e-books, digitized primary sources, statistical sources, and more.

Find data, GIS, and scientific data services and software offered by the Library and other UC Berkeley campus facilities.

Find and cite

Visit our Research help page for help finding (and citing) articles, books and e-books, and audio and video materials.

Research guides

Librarian experts have created these research guides to help you find resources and services by subject, course, and topic at UC Berkeley.

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Scholarly Communication Services helps scholars use, create, and publish scholarship in ways that promote its dissemination, accessibility, and impact.

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Visit our Teaching + learning page to find tools for instructors; browse workshops and events; learn about the Library’s fellowship program for undergraduates; and level up your digital literacy skills.

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UCSB Library

Open Access Repositories

You are here.

Open repositories are electronic services designed to preserve and provide open access to journal article reprints or preprints, audio, video and other media, and/or digital data.  Unlike electronic journal or book publishers, they do not generally themselves provide editing or peer review services, though they may provide access to edited, peer-reviewed documents. Repositories may be maintained by an institution for the benefit of its own authors and researchers, or be open to deposits from any researcher in a given subject area.  Some funding agencies require that articles and/or data from the research that they fund be deposited in an open access repository (see: Funding Agency Mandates .).  For more detailed information on repositories, consult the Repositories page of the UCSB Library Research Data Management Subject Guide .

University of California Repositories

The Dryad Data Repository  

Dryad is a new self-service research data publishing service for campus.  Dryad provides UCSB researchers with user-friendly tools to upload and describe their data for access and reuse and to create citations and persistent identifiers for each dataset.  Dryad also allows researchers to set a future publication date for data still under peer review.

Dryad is an open data repository with search and browse capabilities for finding and downloading data.  Users can search for data submitted just by UCSB researchers as well as data submitted through one of the other participating institutions, including other UC campuses.

Dryad is FREE for affiliates of UC Santa Barbara with a UCSB NetID.  A personal ORCID identifier is required to deposit data in Dryad.  Visit the  ORCID site  to obtain one.  The first time you log in to Dryad with your ORCID, you will be asked to link your ORCID to your UCSB NetID, and thereafter your deposits will be affiliated with UCSB.  

  • Dryad Data Repository
  • Frequently Asked Questions  – note that Dryad is free for affiliates of UC Santa Barbara so pricing information does not apply
  • Terms of Service
  • Preparing Your Data

For assistance with depositing data or for any questions related to Dryad, contact the UCSB Library Research Data Services .

eScholarship

eScholarship provides a suite of open access, scholarly publishing services and research tools that enable departments, research units, publishing programs, and individual scholars associated with the University of California to have direct control over the creation and dissemination of the full range of their scholarship .  Among its services is providing a repository for postprints of articles by University of California authors. ( http://escholarship.org/publish_postprints.html ).

Merritt is a University of California Curation Center (UC3) repository for digital assets of all kinds, including texts, images, videos, audio recordings and datasets.

Source Lists for Repositories

Directory of Open Access Repositories (OpenDOAR)

OpenDOAR is a directory of open access repositories maintained at the University of Nottingham (UK).  It lists over 2,100 repositories worldwide.  OpenDOAR allows you to search or browse for repositories by name, subject, content type, repository type, country, language, or software.  OpenDOAR also has a tool to allow you to search repository content and provides interesting statistical graphs on subject, country, etc. as well as repository polcies.

Registry of Open Access Repositories (ROAR)

ROAR is a directory of open access repositories worldwide, maintained at the University of Southampton (UK).  It lists almost 2,500 repositories taken from OpenDOAR and other sites.  You may search its list by name, country, subject, software type, date of creation and other criteria. Records for individual repositories display a thumbnail of the home page, activity graphs, country of origin, supporting organization, formats and number of objects contained, as well as a link to the repository itself.

Repository66.org Repository Maps

Repository66.org takes data from ROAR and OpenDOAR and graphs the repositories, using icons to indicate the repository’s size and software platform.  Clicking on the icon provides a link to the repository, information about the repository, and a search box to search it via Google, Google Scholar or Microsoft Live. You may view the worldwide map, or zoom in on specific countries, and filter by software platform or date of founding.

Discipline Specific Repositories

Besides institution-specific responsitories, the other main category of repositories is discipline-specific repositories, designed to serve a particular subject area. Here are a select few.

In addition to the subject search capabilities of the general source lists above, you may also find subject-specific repositories at the Discipline Repositories page ( http://oad.simmons.edu/oadwiki/Disciplinary_repositories ) of the Simmons College Open Access Directory wiki.

Some of the most important subject-specific repositories are:

arXiv, originally created at Los Alamos National Laboratory and now housed at Cornell University, serves the physics community, especially high-energy particle physics.  It is actually a preprint server, acting as the original publisher for many physics papers which may later appear in peer-reviewed journals.

bioRxiv is a free online archive and distribution service for unpublished preprints in the life sciences. By posting preprints on bioRxiv, authors are able to make their findings immediately available to the scientific community and receive feedback on draft manuscripts before they are submitted to journals.

Open Knowledge Repository (World Bank)

The World Bank will be adopting an Open Access policy which went into effect July 1, 2012.  The OKR was created as a home for the Bank's research outputs.  Upon launch, three years worth of publications were made available, but they are working on adding content retrospectively.  See the World Bank's Data Services for access to their open data.

Open Science Framework Preprint Repository

The Open Science Framework hosts repositories across the disciplines.  They are leading the way in a new preprint revolution to facilitate open access to and community review of new research prior to publication.

PubMedCentral (PMC)

PMC is a free full-text archive of biomedical and life sciences journal literature at the U.S. National Institutes of Health's National Library of Medicine (NIH/NLM).  PMC derives its importance as the mandated repository for articles based on research funded by the National Institutes of Health.  Some journals automatically deposit all their content in PMC, others do so selectively at the request of NIH-funded authors.

RePEc (Research Papers in Economics)

RePEc is a collaborative effort of hundreds of volunteers in 76 countries to enhance the dissemination of research in Economics and related sciences. The heart of the project is a decentralized bibliographic database of working papers, journal articles, books, books chapters and software components.

Social Science Research Network

The SSRN eLibrary consists of two parts: an Abstract Database containing abstracts on over 281,400 scholarly working papers and forthcoming papers; and an Electronic Paper Collection, currently containing over 233,400 downloadable full text documents in Adobe Acrobat PDF format. The eLibrary also includes the research papers of a number of Fee Based Partner Publications.

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Research 2030: UC's 10-yr Strategic Plan for Research

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Cost transfer request (ctr), personnel change request (pcr), & labor verification (lv) training for sponsored projects, cost transfer request (ctr), personnel change request (pcr), & labor verification (lv) training for sponsored projects (3/20).

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Target Audience: UC researchers who use biosafety cabinets as part of their research experiments

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Target Audience: UC researchers who plan to ship biohazard materials

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Target Audience: All faculty and staff who conduct research at UC

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Office of research funding, external funding, limited submission.

UC Libraries

UC Libraries

  • About UC Library Search

UC Library Search is powered by Ex Libris Alma/Primo, a centralized library management and discovery system that unites the collections and digital resources for the entire UC system. Prior to the launch of UC Library Search, each UC campus library used different systems to manage its print and electronic resources, alongside separate systems to manage inter-campus borrowing. UC Library Search brings together all ten UC campus libraries, the California Digital Library, and two regional storage facilities in one system. The benefit to the UC Libraries is the means to streamline workflows and enable greater collaboration between campuses in collections management. The users of UC Libraries benefit as well with a centralized location and means to engage with the UC Libraries’ collections. Additional benefits include:

  • UC Library Search will allow faster and easier access to the entire UC Libraries collection: 40+ million physical items, plus digital collections
  • UC Library Search will integrate additional collections databases that are currently only offered to patrons as stand-alone services (e.g. HathiTrust Digital Library, open access journals, etc.)
  • Streamlines data-gathering processes used to make informed and responsible collection development decisions in tandem with new services
  • Current configuration of ten separate campus systems (some of which are aging) creates fragmentation and integration challenges that puts essential library services at risk
  • Enables library staff to innovate and create new services that were not possible when each campus had a separate catalog
  • Creates opportunities for integration with a variety of other library services and related products, such as learning-management systems, potentially improving workflows and reducing redundancies
  • Shared system costs 40% less than 10 campuses carrying out infrastructure improvements separately
  • With the implementation of UC Library Search, UC Libraries will have greater ability to analyze how the collections are used. The new system will aggregate data that is critical for making collection development decisions and guide vendor negotiations
  • Opportunities to improve workflows and reduce redundancies through integration with other products like student information systems or financial systems
  • 2017: Initial discussions and investigations to pursue a systemwide Integrated Library System
  • 2018: Inventory of existing systems completed, plus requirements for a shared system determined
  • 2019: Formal RFP (Request for Proposal) made; Ex Libris Alma/Primo selected to provide the services for UC Library Search
  • March 2020 – July 2021: Implementation carried out by representative groups from all 10 campuses + CDL
  • July 27, 2021: Go-Live
  • UC Library Search News Archive
  • UC Library Search Frequently Asked Questions (FAQs)
  • Melvyl Through Time

Welcome to the UC Irvine Machine Learning Repository

We currently maintain 664 datasets as a service to the machine learning community. Here, you can donate and find datasets used by millions of people all around the world!

Popular Datasets

Iris

A small classic dataset from Fisher, 1936. One of the earliest known datasets used for evaluating classification methods.

Dry Bean Dataset

Dry Bean Dataset

Images of 13,611 grains of 7 different registered dry beans were taken with a high-resolution camera. A total of 16 features; 12 dimensions and 4 shape forms, were obtained from the grains.

Heart Disease

Heart Disease

4 databases: Cleveland, Hungary, Switzerland, and the VA Long Beach

Rice (Cammeo and Osmancik)

Rice (Cammeo and Osmancik)

A total of 3810 rice grain's images were taken for the two species, processed and feature inferences were made. 7 morphological features were obtained for each grain of rice.

Adult

Predict whether income exceeds $50K/yr based on census data. Also known as "Census Income" dataset.

Raisin

Images of the Kecimen and Besni raisin varieties were obtained with CVS. A total of 900 raisins were used, including 450 from both varieties, and 7 morphological features were extracted.

New Datasets

PhiUSIIL Phishing URL (Website)

PhiUSIIL Phishing URL (Website)

PhiUSIIL Phishing URL Dataset is a substantial dataset comprising 134,850 legitimate and 100,945 phishing URLs. Most of the URLs we analyzed, while constructing the dataset, are the latest URLs. Features are extracted from the source code of the webpage and URL. Features such as CharContinuationRate, URLTitleMatchScore, URLCharProb, and TLDLegitimateProb are derived from existing features.

RT-IoT2022

The RT-IoT2022, a proprietary dataset derived from a real-time IoT infrastructure, is introduced as a comprehensive resource integrating a diverse range of IoT devices and sophisticated network attack methodologies. This dataset encompasses both normal and adversarial network behaviours, providing a general representation of real-world scenarios. Incorporating data from IoT devices such as ThingSpeak-LED, Wipro-Bulb, and MQTT-Temp, as well as simulated attack scenarios involving Brute-Force SSH attacks, DDoS attacks using Hping and Slowloris, and Nmap patterns, RT-IoT2022 offers a detailed perspective on the complex nature of network traffic. The bidirectional attributes of network traffic are meticulously captured using the Zeek network monitoring tool and the Flowmeter plugin. Researchers can leverage the RT-IoT2022 dataset to advance the capabilities of Intrusion Detection Systems (IDS), fostering the development of robust and adaptive security solutions for real-time IoT networks.

Regensburg Pediatric Appendicitis

Regensburg Pediatric Appendicitis

This repository holds the data from a cohort of pediatric patients with suspected appendicitis admitted with abdominal pain to Children’s Hospital St. Hedwig in Regensburg, Germany, between 2016 and 2021. Each patient has (potentially multiple) ultrasound (US) images, aka views, tabular data comprising laboratory, physical examination, scoring results and ultrasonographic findings extracted manually by the experts, and three target variables, namely, diagnosis, management and severity.

National Poll on Healthy Aging (NPHA)

National Poll on Healthy Aging (NPHA)

This is a subset of the NPHA dataset filtered down to develop and validate machine learning algorithms for predicting the number of doctors a survey respondent sees in a year. This dataset’s records represent seniors who responded to the NPHA survey.

Infrared Thermography Temperature

Infrared Thermography Temperature

The Infrared Thermography Temperature Dataset contains temperatures read from various locations of inferred images about patients, with the addition of oral temperatures measured for each individual. The 33 features consist of gender, age, ethnicity, ambiant temperature, humidity, distance, and other temperature readings from the thermal images. The dataset is intended to be used in a regression task to predict the oral temperature using the environment information as well as the thermal image readings.

Jute Pest

This dataset has 17 classes. Data are divided in three partition train, val and test. The classes are 0 : Beet Armyworm 1 : Black Hairy 2 : Cutworm 3 : Field Cricket 4 : Jute Aphid 5 : Jute Hairy 6 : Jute Red Mite 7 : Jute Semilooper 8 : Jute Stem Girdler 9 : Jute Stem Weevil 10 : Leaf Beetle 11 : Mealybug 12 : Pod Borer 13 : Scopula Emissaria 14 : Termite 15 : Termite odontotermes (Rambur) 16 : Yellow Mite

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UC Law SF Scholarship Repository

UC Law SF Scholarship Repository

Browse research and scholarship follow, faculty scholarship, faculty books, the judges' book, law journals, student scholarship, uc law sf archives and history, special collections, departments, centers, & programs, california ballot initiatives & ballot propositions, research data collection, featured collection, covid-19 community updates.

The repository is a service of the UC Law SF libraries. Research and scholarly output included here has been selected and deposited by the individual university departments and centers on campus.

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California Reading and Literacy Improvement and Public Library Construction and Renovation Bond Act of 2000.

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The  UC Research Repository  is an  open-access  database of original research authored by Canterbury academics, researchers and postgraduate students. The aim of the Repository is to expose UC-authored research to as wide an audience as possible, by providing free access to full-text research through common internet search tools, such as Google Scholar and SCOPUS.

The UC Research Repository is automatically harvested by  NZResearch.org ,  OCLC , and Canterbury Earthquake material is harvested by the Canterbury Earthquake Digital Archive  CEISMIC .

What does the UCRR Collect

The Repository accepts many types of scholarly output, and can handle accommodate written documents, images, video and audio recordings. We are interested in:

  • Formal research outputs (e.g. articles, chapters, books),
  • “Grey” scholarly material (e.g. conference presentations, posters),
  • Student research (e.g. theses, dissertations and research reports),
  • As well as creative works, research datasets and any other material that could be part of scholarly communication.

Most recent content added to the UCRR

Ucrr - frequently asked questions, what kinds of research do we collect, why do i have to put a file into the uc research repository, and what is "mandatory deposit", how do i put my work in the repository, which version to upload - who checks copyright, check your publisher's standard copyright agreement with sherpa romeo, licences - what can people use my work for, how to request a withdrawal (a ‘takedown’) from the uc research repository., software - what is dspace, external sources - more help.

The Repository accepts many types of scholarly output, and can handle accommodate written documents, images, video and audio recordings. The bulk of our collection consists of:

  • chapters in books
  • conference papers (and powerpoint slides)
  • journal articles
  • theses (masters and doctoral)
  • Other student work (some exceptional honours/PGDip reports)
  • working papers
  • Raw research data
  • Creative work (translations, original writing)

In 2014 the University of Canterbury Senior Management Team agreed to a policy for researchers to include all appropriate research in the UC Research Repository. That means all researchers are expected to put a version of their research outputs into the UC Research Repository, copyright and other reasons allowing.

In effect the UC Research Repository has gone from opt-in, where material is volunteered, to an opt-out system. Researchers can opt-out from submitting their research – remembering that all copyright clearance will be handled after the research has been submitted to the UC Research Repository by library staff.

The university is keen for its research to reach the widest audience possible, and the Mandatory Deposit policy is designed to encourage as much material as possible to be made openly accessible. This policy is becoming increasingly common at universities and research institutions globally ( http://roarmap.eprints.org/ ).

Research funding bodies are increasingly making Open Access to research outputs mandatory, so this policy makes it easier for researchers to meet their obligations as well.

Comments, feedback and discussion about this policy is welcomed – please contact the  UC Research Repository maintainer.

This relates to research outputs. For theses, please refer to our  thesis guide

Adding work to the UC Research Repository is done through  UC Elements.  You can add the repository version once your work has been accepted This will take you through a short wizard which should guide as to which file you are able to upload.

research repository uc

If you have already claimed an item, you can start the upload process from your list of publications using the 'upload fulltext' button.

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For more information about Elements and outputs, see the  intranet guide to Elements

Once uploaded, Library Staff will double check to make sure that the version you have uploaded corresponds to the licence your journal has given you to submit to an institutional repository.  You can check your contract, or look up the  SHERPA RoMEO  database if you want to check yourself.

The publishing process, version by version

This form will search the Sherpa RoMEO database of publishers default contracts, and suggst which version of your work you can upload to the UC Reseach repository.

Still confused about pre- and post- prints?

You are not alone if knowing which version of the article is the one that is allowed by your publisher. Even the best of us find the myriad of conditions complicated and confusing (see  Sherpa RoMEO's definition ). Remember we will check each item as they are uploaded. and we will contact you if we think we need another version. Most of the time your accepted manuscript is what we need.

NZ librarians have created a good document with advice on versions, with guidelines on how you might manage your manuscripts to ease the process: the  LCONZ Versions Toolkit .

While theses, conference papers, posters and working papers are normally acceptable in their final format, copyright is often an issue when it comes to making journal articles openly accessible via the web. In the vast majority of cases, copyright over an article is transferred to the journal publisher. Despite this, most journal publishers do allow authors to make their work open-access, albeit with some restrictions on the format of the paper you use.

Usually, publishers do not allow authors to post the final, published version of a paper on the Internet. However, the majority of large publishers do allow you to use your final draft version of the paper, which should be identical in content to the published version, although the formatting may be quite different. In almost all cases where the use of the final draft is permitted, the publisher also insists on the inclusion of a set phrase that identifies the definitive version of the paper as their own, together with a link to their authorised version.

While this sounds like a lot of effort, we believe that these terms are a reasonable compromise, and serve to get the articles out into the public realm, while protecting the interests of the publishers. While some of us might not agree with the idea of restrictions on access at all, this is a pragmatic solution - and it's always good to have a happy publisher.

research repository uc

Sherpa RoMEO

Confused if you can add a specific version of your paper to the repository? Librarians around the world have contributed to a site that brings publisher information together at  Sherpa RoMEO . Type in the name of the journal and it gives you a standard way of understanding which version of your paper (if any) you can upload. Don't hesitate to get in touch if you want more information about licences or copyright.

Once your research has been submitted, the Library carefully vets your submission for copyright compliance (checking the publisher's policy on open-access archiving), after which it is categorised using the Marsden Fund's subject classification scheme. Finally, the item is made live and will pop into public view. If there is a problem with copyright compliance, we will be in touch.

These steps are aimed at reducing your compliance overhead, while ensuring that we play nicely with the copyright holders.

Currently the UC Research Repository has an "all rights reserved" licence for all material so that though it is freely accessible for people to read, their use of that material is very restricted, and explicitly requires the permission of the author for any substantial reuse.

Who to contact To make a request to withdraw content on the UCRR, please contact  [email protected]  with the details of the item, as well as the reasons it should be considered for withdrawal. Acceptable reasons for withdrawal include:

  • Journal publishers' rules
  • Proven copyright violation or plagiarism
  • Legal requirements and proven violations
  • Falsified research
  • Inappropriate use of  indigenous knowledge

How a request to withdraw content will be initally responded to  Your request will be acknowledged by email within 72 hours, and the item will be withdrawn until a final decision is made.

The Repository uses  Dspace,  an open-source, OAI compliant tool created jointly by MIT and HP Labs. 

SHERPA - Clearing house for publisher copyright policies (Southampton University) Publishers allowing use of their PDFs in repositories  (Source: SHERPA) OAI - Open Archives Initiative , including detailed information on the OAI-PMH protocol The LCONZ NZ Versions Toolkit.

Who Checks Copyright?

Once your research has been submitted, the Library carefully vets each submission for copyright compliance. Working out what each publisher allows an institutional repository to upload is complex. Librarians, with the assistance of publishers world wide have compiled a database of copyright terms, and you can check your specific situation at  Sherpa RoMEO .

In many cases a manuscript version of the paper, after it has been refereed and before it has been typeset by the publisher (a ‘postprint’) is acceptable.

UC Research Repository Statement on Reuse, Metadata and Preservation

Information describing items in the repository

  • Anyone may access the metadata free of charge.
  • The metadata may be re-used in any medium without prior permission for not-for-profit purposes and re-sold commercially provided the OAI Identifier or a link to the original metadata record are given.

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  • Access to some or all full items is controlled.
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  • University of Canterbury Research Repository holds all types of materials.
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  • Items may only be deposited by accredited members, academic staff, registered students, and employees of the institution, or their delegated agents.
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  • The administrator only vets items for the eligibility of authors/depositors
  • The validity and authenticity of the content of submissions is the sole responsibility of the depositor.
  • Items can be deposited at any time, but will not be made publicly visible until any publishers' or funders' embargo period has expired.
  • If University of Canterbury Research Repository receives proof of copyright violation, the relevant item will be removed immediately.

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  • Items will be retained indefinitely.
  • It may not be possible to guarantee the readability of some unusual file formats.
  • University of Canterbury Research Repository regularly backs up its files according to current best practice.
  • Items may be removed at the request of the author/copyright holder, but this is strongly discouraged.
  • Withdrawn items are not deleted  per se , but are removed from public view.
  • Withdrawn items' identifiers/URLs are not retained.
  • The metadata of withdrawn items will not be searchable.
  • The earlier version may be withdrawn from public view.
  • There will be links between earlier and later versions, with the most recent version clearly identified.
  • In the event of University of Canterbury Research Repository being closed down, the database will be transferred to another appropriate archive.
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Research Data Management

  • Data Repositories

A key aspect of data management involves not only making articles available, but also the data, code, and materials used to conduct that research. Data repositories are a centralized place to hold data, make data available for use, and organize data in a logical manner.

Which Repository Should I Use?

The best repository for sharing your data depends on your discipline. If there is a national or subject-level repository in your discipline, that would be your first choice. To determine if such repositories exist, you can search the registry of repositories re3data , or check the Open Access Directory of Data Repositories at Simmons University .

It is also possible that your funding agency or your state has a repository you can use. In the absence of these, there are a number of general subject repositories which can take your data. The NNLM Data Repository Finder is a tool that was developed to help locate NIH-supported repositories for sharing research data

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Request a data management services consultation.

Email  [email protected] to schedule a consultation related to the organization, storage, preservation, and sharing of data.

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UC Irvine-led research team discovers role of key enzymes that drive cancer mutations

APOBEC3A and APOBEC3B offer potential new targets for intervention strategies

Three men.

Irvine, Calif., March 18, 2024  — A research team led by the University of California, Irvine has discovered the key role that the APOBEC3A and APOBEC3B enzymes play in driving cancer mutations by modifying the DNA in tumor genomes, offering potential new targets for intervention strategies.

The study, published today online in the journal  Nature Communications , describes how the researchers identified the process by which APOBEC3A and APOBEC3B detect specific DNA structures, resulting in mutations at distinct positions within the tumor genome.

“It’s critical to understand how cancer cells accumulate mutations leading to hot spots that contribute to disease progression, drug resistance and metastasis,” said corresponding author Rémi Buisson, UCI assistant professor of biological chemistry. “Both APOBEC3A and APOBEC3B were known to generate mutations in many kinds of tumors, but until now we did not know how to identify the specific type caused by each. This finding will allow us to develop novel therapies to suppress mutation formation by directly targeting each enzyme accordingly.”

In this study, graduate student Ambrocio Sanchez and postdoctoral fellow Pedro Ortega, both in Buisson’s laboratory at the UCI School of Medicine, developed a new method to characterize the particular kind of DNA modified by APOBEC3A and APOBEC3B. It revealed that the two enzymes do not recognize the same DNA sequences and structures within the genomes of cancer cells. Based on this observation, an innovative approach utilizing these unique target preferences 

cells. Based on this observation, an innovative approach utilizing these unique target preferences was employed to classify cancer patients who had accumulated mutations caused by each enzyme.

“The next steps are to investigate whether mutations caused by these enzymes lead to various types of therapy resistance. It’s also critical to identify molecules that inhibit APOBEC3A and APOBEC3B to prevent mutations from forming. Our findings could, in the future, help to assess patient risk before treatment and suppress tumor evolution using the appropriate drug therapy,” Buisson said.

Other team members included undergraduate and graduate students and postdoctoral fellows from UCI, Harvard Medical School, the University of Southern California, the University of Texas at San Antonio and the University of Minnesota.

This work was supported by the National Institutes of Health’s Research Supplements to Promote Diversity in Health-Related Research program under award R37-CA252081-S; California Institute for Regenerative Medicine stem cell biology training grant TG2-01152; European Molecular Biology Organization postdoctoral fellowship ALTF 213-2023; Cancer Prevention and Research Institute of Texas research training award RP 170345 and Recruitment of Established Investigators award CPRIT RR220053; the National Cancer Institute under awards R37-VA252081 and P01-CA234228; the National Institute of Allergy and Infectious Diseases under award R01 AI150524; and access to UCI’s Genomics Research and Technology Hub, affiliated with the Chao Family Comprehensive Cancer Center, under grant P30-CA062203.

UCI’s Brilliant Future campaign:  Publicly launched on Oct. 4, 2019, the  Brilliant Future campaign  aims to raise awareness and support for UCI. By engaging 75,000 alumni and garnering $2 billion in philanthropic investment, UCI seeks to reach new heights of excellence in student success, health and wellness, research and more. The School of Medicine plays a vital role in the success of the campaign. Learn more by visiting  https://brilliantfuture.uci.edu/uci-school-of-medicine .

About the University of California, Irvine:  Founded in 1965, UCI is a member of the prestigious Association of American Universities and is ranked among the nation’s top 10 public universities by  U.S. News & World Report . The campus has produced five Nobel laureates and is known for its academic achievement, premier research, innovation and anteater mascot. Led by Chancellor Howard Gillman, UCI has more than 36,000 students and offers 224 degree programs. It’s located in one of the world’s safest and most economically vibrant communities and is Orange County’s second-largest employer, contributing $7 billion annually to the local economy and $8 billion statewide. For more on UCI, visit  www.uci.edu .

Media access:  Radio programs/stations may, for a fee, use an on-campus ISDN line to interview UCI faculty and experts, subject to availability and university approval. For more UCI news, visit  news.uci.edu . Additional resources for journalists may be found at  https://news.uci.edu/media-resources .

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Reference sources are research tools that can be consulted for quick answers, facts, or overviews. They can be used to gather initial information as well as provide sources for additional research.

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PLEASE NOTE that some important reference sources in a discipline may not be available online.

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For help and/or suggestions on the content of this guide please contact Olga Hart : [email protected] , phone: (513) 556-1850

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World Leaders in Research-Based User Experience

Research repositories for tracking ux research and growing your researchops.

Portrait of Kara Pernice

October 18, 2020 2020-10-18

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Every UX team needs to organize its user research in a research repository. I first worked on a research repository in the early 1990s. The lessons I learned then still hold true today, as the UX community gets serious about managing and growing user- research programs. These efforts now fall under the umbrella term “ Research Ops ” (with “Ops” being short for “operations” ) .

In This Article:

What is a research repository, relevant elements in a research repository, convenience and findability features in a repository.

A research repository is a shared collection of UX-research-related elements that should support the following functions at the organization level:

  • grow UX awareness and participation in UX work among leadership, product owners, and the organization at large
  • support UX research work, so UX professionals may be more productive as they plan and track research

Stick figures of people

There are two main types of content in a research repository:

  • The input to doing UX research: information for planning and conducting research
  • The output from doing UX research: study findings and reports

Before making a repository, analyze the UX-related processes and tools used (currently or in the near future) in your organization. Consider creating a mind map of how research gets done, or even a journey map or service blueprint of how research is initiated and results are used on development teams.

wireframe with 3 columns, left menu of findings and reports; middle checkbox filters with topic, status, date; and right with a list of findings

Some important components that can be housed in a research repository include:

Infrastructure

  • Research team’s mission and vision communicate what the team is about, how it works, and how it hopes to work in the future. This information can help others to understand the team’s capabilities, what they can expect, and what they can request. An example mission is: The UX-research team provides user and customer research and guidance for all products, services, and systems at the organization in order to maximize usefulness, usability, efficiency, enjoyment, and support for the organization’s vision.
  • Descriptions of research methods help the team learn or be reminded of a process and the reasons for different research types. Method descriptions and best practices can promote consistent high-quality work and even teach a less experienced researcher.
  • Tools and templates for conducting and analyzing research , such as templates for test plans, protocols, reports, interview scripts, user tasks, consent forms, notetaking and tips for using remote-research or analysis tools could also be housed her

Research Planning

  • Strategic research plans for the organization and for individual projects — like you might see in a research roadmap — can keep researchers and the rest of the team focused on the most important areas to research as opposed to every single product feature. When stored in a research repository these are easy to find and access
  • Schedules make research accessible to everyone, by sharing the date, time, location, research method, and what’s being studied. Armed with this information, anyone can join or ask to join in on studies, or at least look for findings upon completion
  • Detailed research plans communicate that research will be happening and how. When stored in a repository they serve as a vision document to align stakeholders and the rest of the team.
  • Research requests enable product teams to request user research to be done. Depending on the research team’s size, mission, planning, and culture, research requests may not be available at all organizations. Research requests can give insight in the research needs at your organization and can drive UX-team growth.

Data and Insights

  • Research reports tell what happened in the research study. They include overarching themes, detailed findings, and sometimes recommendations.
  • Research insights are the detailed findings or chunks of information acquired from each research study. While findings also appear in reports, saving them as their own entities makes it easier to digest them, mark their severity , track their status, and link to specific design and development assignments in the backlog or project database. In other words, each insight is digestible and easy to see, and thus more likely to get addressed.
  • Recordings and transcriptions stored in the repository or, alternatively, linked from the repository, They make user data easily accessible. Summarizing and transcribing each video allows teams to search for exactly what they're looking for. (Fun historical note: In the early 1990s, when usability-testing recordings were too large to store online, my team at Lotus created a video library. Developers could check out the physical videotapes as one would a book at a library. People were so dedicated that they borrowed them to watch the tests they had missed, and sometimes we had to make extra copies of tapes to meet the demand.)
  • Raw notes and artifacts from research sessions are often trashed after they have been analyzed. But some teams keep the notes in case they might be useful for future analysis — for example, if a team was in a rush and focused on one area of the design at the time of the study,  later it may be able to revisit the notes to glean insights related to other aspects of the design. Those notes could help inform journey maps, personas, or other user-focused artifacts.

What Is NOT Always in a Research Repository

  • UX-data analysis is usually done with specialized tools. The result of the analysis could be a text file (for example, for quantitative data analysis done in software such as R) or could be hosted online in a tool-specific format. If the latter, then the repository can link to the result of the analysis. For example, researchers may have conducted thematic analysis using Dovetail; the full research report can include a link to that board so team members can see the reasoning behind the findings.
  • A participant repository or panel is usually not stored within a research repository, even though recruiting research participants is a core function of user research. That’s because the goals and audience for the two repositories tend to be quite different. But it can be helpful for them to link to one another.

There are many other components that research teams need to track internally but that are less likely to be part of a research repository, even though they may be linked from it: user stories in a backlog, participant recruiting tools, and budget tracking for research projects.

People should be able to easily find and discover information about research. Findable and accessible information makes it possible for the team to easily be part of a research project and feel ownership about the findings. Here are some repository attributes that make it easy to use:

  • Supporting tags and metadata, to help people find items by the most granular topics
  • Searchable by keyword (e.g. for research on a certain product feature), project, team, finding, severity, status, and more
  • Hosted in a tool that people can easily access , use, learn and that matches the organization’s culture and mental model
  • Portable, so that repository elements can be easily exported to other applications or formats

Research repositories store and organize information about UX research. They collect not only methodology-related documents, but also research results at various levels of granularity (from individual findings to reports). Their purpose is to streamline the work of the research team and also to make research widely available and easy to consume throughout the organization.

For more information about the growing ResearchOps community, see https://researchops.community/ .

Related Courses

Becoming a ux strategist.

Envision, plan, and successfully lead a user-centered culture

ResearchOps: Scaling User Research

Orchestrate and optimize research to amplify its impact

UX Leader: Essential Skills for Any UX Practitioner

Apply practical leadership skills to your UX role, regardless of your title

Related Topics

  • Managing UX Teams Managing UX Teams

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Nierenberg Prize Awarded to Biochemist Katalin Karikó for Pioneering Research on COVID-19 Vaccines

The public is invited to attend nobel prize winner katalin karikó’s free lecture at scripps institution of oceanography on march 25.

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Hungarian-American biochemist and researcher Katalin Karikó has been selected by Scripps Institution of Oceanography at UC San Diego as the recipient of the 2023 Nierenberg Prize for Science in the Public Interest. Karikó also recently received last year’s Nobel Prize in Physiology or Medicine  for her groundbreaking work on COVID-19 vaccines, alongside co-collaborator Drew Weissman, a renowned physician and researcher at Penn Medicine.

She is best known for her research on messenger RNA — the genetic material that tells our bodies how to make proteins — and the development of mRNA COVID-19 vaccines. Karikó and Weissman MD, PhD invented the modified mRNA technology used in Pfizer-BioNTech and Moderna’s vaccines to prevent COVID-19 infection.

The public is invited to attend the award ceremony and a presentation from Karikó in a free event on March 25 at 6 p.m. at the Robert Paine Scripps Forum for Science, Society and the Environment on the Scripps Oceanography campus.

Her presentation, “Developing mRNA for therapy,” will look at the progress and development of mRNA over the past six decades. Karikó will discuss the journey from the discovery of mRNA in 1961 to its groundbreaking milestone as the first FDA-approved mRNA product in the form of COVID-19 mRNA vaccines in 2021.

The Nierenberg Prize was created through a generous gift from the Nierenberg family to honor William A. Nierenberg (1919-2000), a renowned national science leader who served Scripps Oceanography as director from 1965 to 1986. He was a leading expert in several fields of underwater research and warfare and was known for his work in low-energy nuclear physics. He was elected to the National Academy of Sciences in 1971 and was the recipient of numerous awards and honors for professional research and public service.

The Nierenberg Prize, which includes a bronze medal and $25,000, is awarded for outstanding contributions to science in the public interest. Previous awardees include biochemist Jennifer Doudna and renowned geneticist Svante Pääbo, both also recipients of the Nobel Prize; former NASA astronaut and administrator Charles Bolden; filmmaker Sir David Attenborough; and primatologist Dame Jane Goodall, among other luminaries.

“I feel deeply honored to receive the Nierenberg Prize,” Karikó said. “I did not have the fortune to know William Nierenberg, but we have a lot in common. My life, similarly to his, had a very humbled beginning. And just like his parents, I also immigrated to the United States from Eastern Europe.”

Karikó received her bachelor’s degree in biology and her PhD in biochemistry from University of Szeged in Hungary. After receiving her degrees, she worked with a research team at the Biological Research Center of the Hungarian Academy of Sciences.

In 1985, she immigrated to the United States and began collaborating with Weissman. A few years later, Karikó joined the Perelman School of Medicine at the University of Pennsylvania, where she now serves as an adjunct professor of neurosurgery. From 2013 to 2022, she held the role of senior vice president at BioNTech, located in Mainz, Germany.

For four decades, Karikó has researched messenger RNA technology, focusing on RNA-mediated mechanisms with the ultimate goal of developing in vitro-transcribed (IVT) mRNA for protein therapy. During IVT, genetic information is transcribed from DNA to RNA, and the generated mRNA transcript is used to produce proteins in cells.

After investigating RNA-mediated immune activation through several experiments, Karikó and Weissman discovered a way to modify mRNA. In this modified version, they encapsulate the mRNA in a certain lipid that prevents inflammation and allows mRNA to work without any interference. This groundbreaking discovery was instrumental in ensuring the safety and efficacy of FDA-approved COVID-19 mRNA vaccines developed by BioNTech/Pfizer and Moderna, playing a vital role in fighting the pandemic. Karikó is co-inventor on a total of 14 patents granted by the United States.

“The Nierenberg family is thrilled with the selection of Dr. Katalin Karikó as the 2023 winner of the Nierenberg Prize for Science in the Public Interest. Her thirty year quest against all odds to develop the practical use of messenger RNA literally changed the world with the introduction of vaccines for COVID-19,” said Nicolas Nierenberg, the son of the late William A. Nierenberg for whom the prize is named. “Dr. Karikó is an inspiration to all of us and we are looking forward to hearing her story.” 

Karikó and Weissman also worked together to found RNARx in 2006, a company dedicated to developing mRNA therapeutics for a wide range of diseases. 

Along with Kariko’s pioneering research of COVID-19 vaccines, she and colleagues at BioNTech demonstrated functional use of nucleoside-modified mRNA, encoding antibodies targeting cancer and infectious diseases. Further research on this novel mRNA technology has also shown promise for the treatment of autoimmune diseases. 

Karikó initiated a clinical study in which tumors of patients were injected with modified mRNAs encoding cytokines, which promoted potent antitumor immunity and tumor eradication at local and remote sites. 

In the last two years, Karikó has received many prestigious awards celebrating her mRNA work, including the Japan Prize, the Horwitz Prize, the Paul Ehrlich Prize, the Benjamin Franklin Medal, the Canada Gairdner International Award, the Kovalenko Medal, the Tang Prize, the Warren Alpert Prize, the Princess Asturias Award, the BBVA Frontiers Award, the Breakthrough Prize and the Lasker-DeBakey Clinical Medical Research Award.

Seating is limited and registration is required for this event. If you are interested in attending, please RSVP in advance .

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Inference code for CodeLlama models

meta-llama/codellama

Folders and files, repository files navigation, introducing code llama.

Code Llama is a family of large language models for code based on Llama 2 providing state-of-the-art performance among open models, infilling capabilities, support for large input contexts, and zero-shot instruction following ability for programming tasks. We provide multiple flavors to cover a wide range of applications: foundation models (Code Llama), Python specializations (Code Llama - Python), and instruction-following models (Code Llama - Instruct) with 7B, 13B and 34B parameters each. All models are trained on sequences of 16k tokens and show improvements on inputs with up to 100k tokens. 7B and 13B Code Llama and Code Llama - Instruct variants support infilling based on surrounding content. Code Llama was developed by fine-tuning Llama 2 using a higher sampling of code. As with Llama 2, we applied considerable safety mitigations to the fine-tuned versions of the model. For detailed information on model training, architecture and parameters, evaluations, responsible AI and safety refer to our research paper . Output generated by code generation features of the Llama Materials, including Code Llama, may be subject to third party licenses, including, without limitation, open source licenses.

We are unlocking the power of large language models and our latest version of Code Llama is now accessible to individuals, creators, researchers and businesses of all sizes so that they can experiment, innovate and scale their ideas responsibly. This release includes model weights and starting code for pretrained and fine-tuned Llama language models — ranging from 7B to 34B parameters.

This repository is intended as a minimal example to load Code Llama models and run inference.

In order to download the model weights and tokenizers, please visit the Meta website and accept our License.

Once your request is approved, you will receive a signed URL over email. Then run the download.sh script, passing the URL provided when prompted to start the download. Make sure that you copy the URL text itself, do not use the 'Copy link address' option when you right click the URL. If the copied URL text starts with: https://download.llamameta.net , you copied it correctly. If the copied URL text starts with: https://l.facebook.com , you copied it the wrong way.

Pre-requisites: make sure you have wget and md5sum installed. Then to run the script: bash download.sh .

Keep in mind that the links expire after 24 hours and a certain amount of downloads. If you start seeing errors such as 403: Forbidden , you can always re-request a link.

Model sizes

In a conda environment with PyTorch / CUDA available, clone the repo and run in the top-level directory:

Different models require different model-parallel (MP) values:

All models, except the 70B python and instruct versions, support sequence lengths up to 100,000 tokens, but we pre-allocate the cache according to max_seq_len and max_batch_size values. So set those according to your hardware and use-case.

Pretrained Code Models

The Code Llama and Code Llama - Python models are not fine-tuned to follow instructions. They should be prompted so that the expected answer is the natural continuation of the prompt.

See example_completion.py for some examples. To illustrate, see command below to run it with the CodeLlama-7b model ( nproc_per_node needs to be set to the MP value):

Pretrained code models are: the Code Llama models CodeLlama-7b , CodeLlama-13b , CodeLlama-34b , CodeLlama-70b and the Code Llama - Python models CodeLlama-7b-Python , CodeLlama-13b-Python , CodeLlama-34b-Python , CodeLlama-70b-Python .

Code Infilling

Code Llama and Code Llama - Instruct 7B and 13B models are capable of filling in code given the surrounding context.

See example_infilling.py for some examples. The CodeLlama-7b model can be run for infilling with the command below ( nproc_per_node needs to be set to the MP value):

Pretrained infilling models are: the Code Llama models CodeLlama-7b and CodeLlama-13b and the Code Llama - Instruct models CodeLlama-7b-Instruct , CodeLlama-13b-Instruct .

Fine-tuned Instruction Models

Code Llama - Instruct models are fine-tuned to follow instructions. To get the expected features and performance for the 7B, 13B and 34B variants, a specific formatting defined in chat_completion() needs to be followed, including the INST and <<SYS>> tags, BOS and EOS tokens, and the whitespaces and linebreaks in between (we recommend calling strip() on inputs to avoid double-spaces). CodeLlama-70b-Instruct requires a separate turn-based prompt format defined in dialog_prompt_tokens() . You can use chat_completion() directly to generate answers with all instruct models; it will automatically perform the required formatting.

You can also deploy additional classifiers for filtering out inputs and outputs that are deemed unsafe. See the llama-recipes repo for an example of how to add a safety checker to the inputs and outputs of your inference code.

Examples using CodeLlama-7b-Instruct :

Fine-tuned instruction-following models are: the Code Llama - Instruct models CodeLlama-7b-Instruct , CodeLlama-13b-Instruct , CodeLlama-34b-Instruct , CodeLlama-70b-Instruct .

Code Llama is a new technology that carries potential risks with use. Testing conducted to date has not — and could not — cover all scenarios. In order to help developers address these risks, we have created the Responsible Use Guide . More details can be found in our research papers as well.

Please report any software “bug”, or other problems with the models through one of the following means:

  • Reporting issues with the model: github.com/facebookresearch/codellama
  • Reporting risky content generated by the model: developers.facebook.com/llama_output_feedback
  • Reporting bugs and security concerns: facebook.com/whitehat/info

See MODEL_CARD.md for the model card of Code Llama.

Our model and weights are licensed for both researchers and commercial entities, upholding the principles of openness. Our mission is to empower individuals, and industry through this opportunity, while fostering an environment of discovery and ethical AI advancements.

See the LICENSE file, as well as our accompanying Acceptable Use Policy

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Expo students showcase their car at the event.

UC student groups slated to present at engineering expo

Uc engineering seniors showcase capstone projects at third annual ceas expo on april 9.

headshot of Lindsey Osterfeld

Each year, senior students at the University of Cincinnati's College of Engineering and Applied Science, or CEAS, showcase their capstone projects at the CEAS Expo held at the Duke Energy Convention Center in downtown Cincinnati.

At the 2023 CEAS Expo, one of the winning projects was a robotic blackjack dealer. Photo/Corrie Mayer/ CEAS Marketing

The event features projects that range from medical devices, formula style vehicles, robots, progressive research experiments, interactive products and more. Past winning projects include a robotic blackjack dealer, a working t-shirt cannon, solar energy solutions and a double-arm prosthetic, to list a few.

Organized by the college's student government,  CEAS Tribunal , this year's Expo will be held Tuesday, April 9 and is expected to draw hundreds of attendees, including industry professionals, alumni, underclass students and community members. 

The engineering program at UC consists of five years of diligent work in the classroom and semester-long  co-op  rotations working in the engineering field. The Expo event is a chance to show off all the hard work they put in as undergraduate students before they graduate. 

Expo attendees try out a virtual reality student project. Photo/Corrie Mayer/CEAS Marketing

UC students create hydroponic device for their Expo project. Photo/Corrie Mayer/CEAS Marketing

"Planning a large-scale event like this takes a lot of coordination behind the scenes," said Maggie Sprung, second-year mechanical engineering student and Expo chair. "We start the planning process in the summer, making it a three-semester commitment." 

This year's Expo, the third annual, is set to be the biggest yet. 226 groups, culminating nearly 1,000 students, are scheduled to present at the event. Student projects include a baseball mound programmed to read and track the pitcher's movements, an espresso machine, numerous medical devices, drones and more. 

A new feature of this year's Expo will be a designated demo area for groups to show attendees what their project can do. Groups will be able to fly drones, control their robots and allow the audience to get a full, immersive experience. 

Students really want to show off the hard work they've put into these projects.

Maggie Sprung CEAS Expo Chair

Students of Bearcat Solar Car present their vehicle at the Expo. Photo/Corrie Mayer/CEAS Marketing

"Students really want to show off the hard work they've put into these projects and what they can do," Sprung said. 

Volunteer judges will select the top projects and those teams will be awarded prize money. Learn more about sponsorship opportunities or volunteering as a judge.

This event is free and open to the public from 12:00 - 5:00p.m. on Tuesday, April 9. For attendees, free shuttle service will run continuously throughout the day from Lindner Circle on UC's campus to the convention center. Additionally, the convention center has several paid parking garages that are also available during the event. 

Featured image at top: CEAS students of Bearcat Motorsports discuss their vehicle with an Expo judge. Photo/Corrie Mayer/CEAS Marketing

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University of California leader Theresa Maldonado elected president of the American Association for the Advancement of Science

Banner from the American Association for the Advancement of Science showing three headshots of the following three people: Theresa Maldonado (Latina woman with curly hair) as Newest AAAS President-Elect, Neuroscientist Morton Ann Gernsbacher (white woman with red hair) and Biologist Juan S. Ramírez Lugo Re-Elected to AAAS Board of Directors (Latino man with goatee)

Theresa Maldonado, vice president for research and innovation at the University of California, has been elected president of the American Association for the Advancement of Science (AAAS).

With more than 120,000 individual members in more than 91 countries, AAAS is the world’s largest multidisciplinary scientific society and a leading publisher of innovative research through the Science family of journals. Starting immediately, Maldonado will serve a one-year term as president-elect, followed by one year as AAAS president, and one year as immediate past-president.

Maldonado joined the University of California Office of the President in 2020, after a rich  career spanning industry (AT&T Bell Laboratories), the federal government (National Science Foundation), and academia (faculty and university administration) She now oversees one of the world’s largest research and innovation enterprises, encompassing UC’s 10 campuses, three UC-managed Department of Energy national laboratories, a statewide division of Agriculture & Natural Resources, and UC Health.

Accordingly, she describes herself as a “dot connector and systems thinker.” She sees AAAS as serving several unique roles in support of the nation’s scientific achievement: as an advancer of systems thinking, an aligner of the competing interests in the many communities — including academia, industry and government — that comprise the scientific enterprise, and a trusted listener who builds consensus and collaboration through impactful partnerships.

“The potential to authentically engage different people, diverse thoughts, and systems thinking is tremendous; we just need the alignment and sense of urgency,” Maldonado said in her AAAS candidate statement . “AAAS is at a pivotal moment as a professional society to enable and guide the scientific enterprise, policymakers, and an inclusive global scientific citizenry to reimagine and influence future directions for the benefit of society.”

During her time at UC, Maldonado has utilized her position as UC’s chief research officer to tackle some of California’s thorniest challenges. Upon her arrival in 2020, she engaged in close partnership with the California Department of Public Health, UC Health and UC-wide stakeholders, marshaling UC research labs to reduce COVID testing and sequencing bottlenecks. More recently, she played an instrumental role in securing $185 million from California — the state’s largest investment in UC-administered research. Of this investment, $100M supports the statewide Climate Action Initiative , which funds research and innovation and entrepreneurship programs aimed at boosting climate resilience across the state with a focus on protections for the state’s most vulnerable communities.

She also oversaw California’s bid to launch a clean hydrogen economy. In October 2023, the U.S. Department of Energy announced a $1.2B award for the Alliance for Renewable Clean Hydrogen Energy Systems (ARCHES) , a statewide public-private partnership led by UC (Research & Innovation), the Governor’s office, the State Building and Construction Trades Council of California, and Renewables 100. Partners include industry, government agencies, ports, labor, communities, and others. This effort brings together communities living along some of California’s most polluted ports and transportation corridors to deploy renewable, clean energy. In addition, Maldonado is working to revitalize UC’s innovation transfer ecosystem, which supports campus research and technology programs to bring UC’s research from the lab to market for public benefit and economic growth.

“In selecting Theresa Maldonado, the AAAS community should have great confidence in its elected leadership for the next few years,” said Sudip S. Parikh, chief executive officer of AAAS and executive publisher of the Science family of journals. “She brings a unique perspective and many strengths to the organization, and I’m glad to have her as part of our leadership team.”

Additional information about AAAS leadership and Maldonado’s role as president-elect can be found here .

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‘I got Davis!’ Match Day places medical students into residency programs

More than 100 fourth-year students learned Friday where they’ll head for training after graduation

A couple of minutes before 9 a.m. Friday, UC Davis fourth-year medical student Treysi Vargas received an email that would alter her family life — for better or worse.

The email, from the National Resident Matching Program , would tell Vargas if she would stay at UC Davis for her OB-GYN training the next four years, or move as far as Chicago. Her husband Maarouf Saad is planted at UC Davis Health for several years, training in orthopaedics. He massaged Vargas’ neck while waiting to read the email together, surrounded by several friends.

“I am feeling super anxious,” she said at a friend’s home near the medical school. “We’ll see what happens.”

Vargas clicked open the email, let out a scream and kissed her husband. “I got Davis!”

She was among the 115 UC Davis medical students — and tens of thousands from across the country — who simultaneously learned where they’ll attend residency training after graduation this spring. For decades, UC Davis students would open a personalized envelope at their school on the third Friday in March to learn where they matched. But since the coronavirus pandemic, the students have taken part from homes, surrounded by friends and family, while logged into a Zoom meeting with all their classmates.

Residency is an intensive training program that lasts anywhere from three to seven years, depending on the medical specialty. It’s a necessary step on the path to becoming a board-certified physician and Match Day is an unforgettable part of the long journey.

“This is amazing!” Vargas said. “My husband is a resident here at Davis so being able to stay together was extremely important to me.” They got married just six months ago. "And also,” she added, “I know I’ll get amazing training here at UC Davis.”

Seven people including some medical students, sit on and around a sofa celebrating Match Day results with each other

There’s a doctor (or five) in the house

Sirjan Mor was waiting in a living room decorated with shiny foil balloons and banners. Donuts and coffee cups covered the kitchen table, but Mor and her classmates didn’t need more caffeine. Pacing around the Sacramento home, they were already running on nerves.

“This is basically the day that we worked so hard for all through med school,” she said. “There’s a lot of hopes, dreams and expectations attached to this day.”

The aspiring neurosurgeon was joined by classmates Sylvia Cruz, Emmanuel Gaeta and Eric Robles on this Match Day. A handful of parents and friends were also there for the big moment.

“I’ll be refreshing my e-mail and hopefully I’ll get UC Davis. I want to stay here for anesthesiology,” Robles said.

The students’ fingers hovered over their smart phones in anticipation at 9:00 a.m. sharp. But two minutes ahead of schedule, the tension in the room was pierced by a gasp from Cruz.

“We’re staying!” she shouted, excitedly.

Friends and family cheered. Cruz hugged her fiancé, a University of Toledo medical student who had flown to Sacramento to celebrate together — and learned he also matched into UC Davis. Theirs is called a “couples match,” as the two students had linked their residency choices and sought to be placed together in the same geographic area.

Mor matched into neurosurgery, Cruz into general surgery, and Robles into anesthesiology — all at UC Davis. Gaeta matched into general surgery at the University of Illinois, Peoria.

Proud parents snapped photos of their newly matched students, who posed proudly while holding celebratory signs and balloons. The balloons read, “There’s a doctor in the house.”

View this post on Instagram A post shared by UC Davis School of Medicine (@ucdavismedschool)

Summer Meyer and Pooja Patel: Nerves turn into excitement

It was a morning that started with a lot of nervous energy that turned into jubilant excitement for Summer Meyer and Pooja Patel.

The two roommates anxiously sat at their computers counting down to 9 a.m., as they eagerly waited to hear where they would spend the next four years.

“I got it, I got the email,” Meyer called out, as she turned to her fiancé Matt. “Should I open it?”

Matt and Meyer’s mother gathered behind her as she opened the email on her computer.

“I got Davis!” Meyer exclaimed.

Meyer, who will train in dermatology, hugged Matt and then turned to embrace her mother.

“I am so grateful to match at UC Davis,” declared Meyer. “Dermatology is such a challenging field, and I am thrilled to have matched at a program that is near and dear to my heart.”

Patel matched with Oregon Health & Science University (OHSU) in internal medicine.

“I have always wanted to be a physician and I am incredibly grateful to match with OHSU, who will do an excellent job of training me to achieve my dream.”

To cap off the morning, Meyer and Patel sipped mimosas and visited with their families.

“We are so happy to have our families here with us today,” they both shared. “We could not have done this without them.”

Five women and a man gather at a brown kitchen table with two laptops open

The inner workings of the matchmaker

Medical students spend part of their final year in school deciding which specialty field and training program to pursue. They gain patient-care experience at various academic medical centers, hospitals and clinics and attend interviews with residency program directors. Then they make a ranked list of the locations they’d like to train at following graduation.

Some students submit several choices. Others pick dozens. Their lists are entered into the database of the National Resident Matching Program.

Training site leaders also submit a ranked list of students they’re interested in hiring as residents. A computer plays matchmaker for about 37,000 positions.

Students, and the training sites, have no idea who will match where, until 9 a.m. PDT, when the incoming emails start to buzz and beep across the country.

“It’s really an anxiety-provoking time,” said Sharad Jain, the UC Davis associate dean of students. “You’ve been working at this for four long years and suddenly it all comes together in that one moment.”

Young woman in blue dress smiles big looking into a phone surrounded by a ring light

Nearly a quarter of the matched students, 24%, will stay at UC Davis School of Medicine. Many of them will train in the medical center and some will be assigned to Federally Qualified Health Centers, where they’ll care for underserved patients.

A total of 81% will remain in California, and 54% will train in primary care, such as internal medicine and family medicine. These are specialty areas that are in short supply in places like Sacramento and throughout the Central Valley.

“We really value the importance of our workforce mission at UC Davis, so we’re thrilled when our students are going to stay here and take care of the people of our state… and address those workforce shortages,” Jain said.

Celebration on campus

After students learned of their matches at home, they went to their school campus in Sacramento to celebrate with classmates.

Among the crowd that gathered at Vanderhoef Lawn was Reza Taghavi, who matched at OHSU in interventional radiology, a specialty whose doctors insert stents to unblock arteries of patients who suffer heart attacks.

The specialty makes a lot of sense for Taghavi, because imaging and procedures rely on advanced technolgy, a field he used to work in during his previous career with Amazon in Silicon Valley.

He looks forward to moving to Portland, where he’s heard positive reviews about the coffee and beer scenes.

“I’ve never lived out of California so it’s nice to go out and expand my horizons,” he said.

Pamela Wu and Liam Connolly contributed to this story.

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Edwin Garcia

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Phone: 916-734-9323

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  1. Repositories

    Scholar@UC. Scholar@UC is a digital repository that enables the University of Cincinnati community to share its research and scholarly work with a worldwide audience. Faculty and staff can use Scholar@UC to collect their work in one location and create a durable and citeable record of their papers, presentations, publications, datasets, or ...

  2. UC Research Repository :: Home

    The UC Research Repository collects, stores and makes available original research from postgraduate students, researchers and academics based at the University of Canterbury. Search. Communities . Select a community to browse its collections. Now showing 1 - 11 of 11.

  3. Research Data Resources

    Research Data Resources. There are many resouces at UC that can help you plan and execute your research project. If you have questions about the resources, please contact Research and Data Services at [email protected]. Expand All. Collapse All. Research Data Management Planning. Working with Data. Archiving, Publishing, and Sharing Data.

  4. About

    FAQ. Scholar@UC is a digital repository that enables the University of Cincinnati community to share research and scholarly work with a worldwide audience. Faculty and staff can use Scholar@UC to collect work in one location and create a durable and citeable record of papers, presentations, publications, datasets, or other scholarly creations.

  5. Search

    Browzine- BrowZine is an app for Apple or Android smart phones and devices that helps you flip through the scholarly e-journals available through UC Libraries. Browzine has sorted UC's e-journals into broad subjects and then into narrower disciplines. You can save and organize your most-used e-journals on virtual bookshelves saved to your account.

  6. Research Guides: Education Complete: Theses & Dissertations

    Over 2.1 million titles are available for purchase as printed copies. The database offers full text for most of the dissertations added since 1997 and strong retrospective full-text coverage for older graduate works. It also includes PQDT UK & Ireland content. Coverage: 1861 - present. Electronic Theses and Dissertations (ETD) Center (OhioLINK)

  7. UC Library Search

    UC Library Search connects the libraries on all 10 University of California campuses through a unified discovery and borrowing system. UC Library Search features the following enhancements: Search your home campus library collection as well as the collections of all 10 UC libraries in the same system; Locate the full text of millions of print ...

  8. President Drake announces the introduction of UC Library Search

    For the UC research community - from first-years to faculty - UC Library Search means faster and easier access to critical resources. In addition to aggregating search results from more than 40 million physical volumes across all campuses, the platform seamlessly connects users with digitally available journals, books and library databases. ...

  9. Research

    Research. The UC Berkeley Library is here to support you with your research, no matter the subject. Explore our world-class collections, and get help with honing your topic, finding (and citing) high-quality sources, putting your work out into the world, and more. Explore our digitized treasures. Find articles, videos, and books.

  10. Research Guides: Graduate Students' Guide to Library Resources and

    ProQuest Dissertations and Theses: Global (PQDTGlobal) is the world's most comprehensive collection of full-text dissertations and theses. As the official digital dissertations archive for the Library of Congress and as the database of record for graduate research, PQDTGlobal includes millions of searchable citations to dissertations and theses from 1861 to the present day together with over a ...

  11. Researcher Tools

    The University of Cincinnati offers SPIN to provide a platform to search for Funding Opportunities. It features customizable queries for funding opportunities that match exactly what you are eligible to receive. To access this tool go to spin.infoedglobal.com while on a UC network. In order to create custom searches you must create an account ...

  12. Open Access Repositories

    Dryad is an open data repository with search and browse capabilities for finding and downloading data. Users can search for data submitted just by UCSB researchers as well as data submitted through one of the other participating institutions, including other UC campuses. Dryad is FREE for affiliates of UC Santa Barbara with a UCSB NetID.

  13. Research 2030: UC's 10-yr Strategic Plan for Research

    Research 2030: UC's 10-yr Strategic Plan for Research. The University of Cincinnati is the leading R1 urban university in our region with unrivaled talent solving problems that matter. We are rigorously pursuing diversity, equity & inclusion in research and actively transforming society through game-changing knowledge and disruptive discoveries.

  14. About UC Library Search

    UC Library Search will allow faster and easier access to the entire UC Libraries collection: 40+ million physical items, plus digital collections. UC Library Search will integrate additional collections databases that are currently only offered to patrons as stand-alone services (e.g. HathiTrust Digital Library, open access journals, etc.)

  15. UCI Machine Learning Repository

    Welcome to the UC Irvine Machine Learning Repository. We currently maintain 664 datasets as a service to the machine learning community. ... This repository holds the data from a cohort of pediatric patients with suspected appendicitis admitted with abdominal pain to Children's Hospital St. Hedwig in Regensburg, Germany, between 2016 and 2021

  16. UC Law SF Scholarship Repository

    Research Data Collection. Featured Collection COVID-19 Community Updates. The repository is a service of the UC Law SF libraries. Research and scholarly output included here has been selected and deposited by the individual university departments and centers on campus. At a Glance.

  17. Repositories

    Repositories | University of Cincinnati. Home » Library Locations » Health Sciences » Digital Scholarship » Repositories.

  18. Subject Guides: 5. Publish & Share: UC Research Repository

    The UC Research Repository is an open-access database of original research authored by Canterbury academics, researchers and postgraduate students. The aim of the Repository is to expose UC-authored research to as wide an audience as possible, by providing free access to full-text research through common internet search tools, such as Google Scholar and SCOPUS.

  19. Data Repositories

    Data Repositories. A key aspect of data management involves not only making articles available, but also the data, code, and materials used to conduct that research. Data repositories are a centralized place to hold data, make data available for use, and organize data in a logical manner.

  20. WCPO: Cincinnati a hub for stroke research

    WCPO highlighted the Steps for Stroke 2024 event, raising money to advance stroke research, including at the University of Cincinnati. Bethany Moeddel, a two-time stroke survivor, participated in the event for the 12th time on March 17 and told WCPO her parents brought her to the University of Cincinnati because of its status as a world-class leader in stroke research and patient care.

  21. UC Research Repository

    Introduction. The UC Research Repository is an open-access database of original research authored by Canterbury academics, researchers and postgraduate students. The aim of the Repository is to expose UC-authored research to as wide an audience as possible, by providing free access to full-text research through common internet search tools ...

  22. UC Irvine-led research team discovers role of key enzymes that drive

    Irvine, Calif., March 18, 2024 — A research team led by the University of California, Irvine has discovered the key role that the APOBEC3A and APOBEC3B enzymes play in driving cancer mutations by modifying the DNA in tumor genomes, offering potential new targets for intervention strategies.. The study, published today online in the journal Nature Communications, describes how the researchers ...

  23. Research Guides: Online Reference Shelf: Home

    Reference sources are research tools that can be consulted for quick answers, facts, or overviews. They can be used to gather initial information as well as provide sources for additional research. This guide provides links to the most popular general reference resources in the UC Libraries collections and tips for finding online reference sources.

  24. Research Repositories for Tracking UX Research and Growing Your ResearchOps

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    Along with Kariko's pioneering research of COVID-19 vaccines, she and colleagues at BioNTech demonstrated functional use of nucleoside-modified mRNA, encoding antibodies targeting cancer and infectious diseases. Further research on this novel mRNA technology has also shown promise for the treatment of autoimmune diseases.

  26. GitHub

    Code Llama - Instruct models are fine-tuned to follow instructions. To get the expected features and performance for the 7B, 13B and 34B variants, a specific formatting defined in chat_completion() needs to be followed, including the INST and <<SYS>> tags, BOS and EOS tokens, and the whitespaces and linebreaks in between (we recommend calling strip() on inputs to avoid double-spaces).

  27. UC student groups slated to present at engineering expo

    Each year, senior students at the University of Cincinnati's College of Engineering and Applied Science (CEAS) showcase their capstone projects at the CEAS Expo held at the Duke Energy Convention Center in downtown Cincinnati. The event features projects that range from medical devices, formula style vehicles, robots, progressive research experiments, interactive products and more.

  28. University of California leader Theresa Maldonado elected president of

    Maldonado joined the University of California Office of the President in 2020, after a rich career spanning industry (AT&T Bell Laboratories), the federal government (National Science Foundation), and academia (faculty and university administration) She now oversees one of the world's largest research and innovation enterprises, encompassing UC's 10 campuses, three UC-managed Department of ...

  29. 'I got Davis!' Match Day places medical students ...

    A couple of minutes before 9 a.m. Friday, UC Davis fourth-year medical student Treysi Vargas received an email that would alter her family life — for better or worse. The email, from the National Resident Matching Program, would tell Vargas if she would stay at UC Davis for her OB-GYN training the next four years, or move as far as Chicago ...

  30. Online Reference Shelf

    Online Reference Shelf. Online Reference Shelf. Links to the most popular general reference resource and tips for finding online reference sources. Online Reference Assistance - Ask a Librarian. Submit your reference question or reach a subject specialist.