phd position berlin biology

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PhD position in Computational and Developmental Biology in Berlin (m/f/d)

Job Details

• You will develop new algorithms to infer cellular differentiation trajectories in the developing embryo from time-resolved single-cell RNA, spatial transcriptomics and lineage tracing data
• You will use machine learning methods to combine spatial transcriptomics data with other data modalities such as single-cell transcriptome or advanced microscopy data
• You will compare mouse embryonic development with a variety of other species (e.g. human, fish, bird) and synthetic embryo models
• You will analyse and compare synthetic organoid development with in vivo embryonic development
• You will work closely with experimental collaborators
• You will be an active member in a highly interdisciplinary team, that involves data scientists and computational and experimental biologists
• MSc degree in the computational or natural sciences
• Strong computational or quantitative focus (computational biology, bioinformatics, mathematics or a related field)
• Strong programming skills (Python, R) are essential; experience in building efficient and reusable software would be a plus
• Excellent communication skills facilitating frequent exchange with group members and scientific collaborators
• Solid statistical knowledge and experience with state-of-the-art machine learning methods
• Ability to work independently and to undertake challenging analysis tasks
• international working environment with communication in English and German
• interesting career opportunities and a range of opportunities for further qualification and training
• Compatibility of family and career certified by the workandfamily audit (“berufundfamilie audit”)
• Support for "New Berliners" through the MDC Welcome & Family Office
• On-campus health and fitness center
• Stimulating and international research environment with excellent science
• Opportunity to work on cutting-edge biomedical data
• Ability to become an expert in single-cell genomics and machine learning approaches to biomedical data
• A remuneration in accordance with the collective agreement for the federal public service (TVöD-Bund), including additional company pension schemes
• Flexible working hours and childcare support
• Subsidy for the job ticket
• Additional health benefits such as flu vaccination, eye test, ergonomics advice at the workplace
• The possibility of mobile working

This research center is part of the Helmholtz Association of German Research Centers. With more than 42,000 employees and an annual budget of over € 5 billion, the Helmholtz Association is Germany's largest scientific organisation.

The Helmholtz Association contributes to solving major challenges to assure the future of our society. With more than 39,000 people on staff in 18 national research centres, the Helmholtz Association is Germany’s largest scientific organization. The name Helmholtz stands for concerted research in which networks form the key principle behind inquiring thought and action. Concerted research is efficient and flexible.

The profile of the Helmholtz Association

The Helmholtz Association performs cutting-edge research which contributes substantially to solving the grand challenges of science, society and industry. To succeed in meeting these responsibilities, Helmholtz concentrates its work in six research fields: Energy, Earth and Environment, Health, Key Technologies, Matter, as well as Aeronautics, Space and Transport. Within each of these fields, research programs are developed by our scientists and regularly evaluated by renowned international experts. Their evaluation forms the basis for the programme-oriented funding that is allocated to Helmholtz research. Within the six research fields, Helmholtz scientists cooperate with each other and with external partners – working across disciplinary, organizational and national borders.

Promoting young academics

Helmholtz scientists, a high-performance infrastructure and modern and efficient research management are the ingredients to the Helmholtz Association‘s success and global impact. Promoting young researchers is a major priority for the Helmholtz Association. Its qualification schemes for young researchers are geared mainly towards PhD students, postdocs and young managers. The Helmholtz Association has set high standards for its talent management. Its strategy begins with targeted recruitment of highly qualified staff at all levels, followed by comprehensive support aimed at further developing their potential. Ensuring equal opportunities is an essential element in all talent management activities undertaken by the Helmholtz Association.

The Helmholtz Graduate Schools  and  Research Schools  at almost all Helmholtz Centres provide doctoral students with the general and specific skills and training they need, as well as ample opportunity to network with other working groups. The period following a doctorate is decisive in determining the direction and success of a scientific career. For this reason, we are about to establish Career Centers for postdoctoral researchers in the Helmholtz centres and a mentoring programme for especially gifted PostDocs in order to foster career orientation. This equips young researchers with the skills they need to go on to head a  Helmholtz Young Investigators Group , for example. As a Young Investigator Group leader, junior scientists can independently set up their own group to conduct research in their specialist field.

Within its talent management strategy, the Helmholtz Association pays special attention to the increased recruitment of talented female scientists both from Germany and abroad. To this end, there are currently two funding programs supporting this policy ‘ Funding of first-time appointments of excellent women scientists (W2/W3)’ and ‘Funding to recruit top-level international women scientists (W3)’ .

The increasing complexity of the content, structures and framework conditions of scientific work today requires researchers to organise their projects, their employees and, of course, themselves in a highly professional and effective way. In response to these demands, we have set up the  Helmholtz Management Academy  to provide junior leaders in science with professional management training. Furthermore, the Helmholtz network provides a platform for the alumni of the Helmholtz Management Academy and Mentoring programme to come together and share their experiences of leadership, career development and lifelong learning.

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PhD Position (m/f/div) – Fully Funded

PhD student Posted on Feb 19, 2024

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Max Planck Institute for Infection Biology , Berlin, Germany

Description

Prof. Dr. Simone Reber – Professor at the Berliner Hochschule für Technik (BHT) and Research Fellow at the Max Planck Institute for Infection Biology – is looking to recruit one outstanding PhD student to work within the research project “Berlin Initiative for Applied Foundation Model Research” – (Appl-FM) for machine learning in robotics, biology, and medicine starting in April 2024 in Berlin.

The position is funded for five years (65% public tariff level [TV-L] E 13).

Project Description: You will research in a team of twenty scientists with the aim of completing a doctorate. The multidisciplinary team works together on application-oriented basic research on Foundation Models (FM) – i.e. computer models that are specifically trained for the research areas of robotics, quantitative biology, and predictive medicine using artificial intelligence and machine learning.

The vision of the project is threefold:

• Robots are to learn how to move from demonstrations
• Cellular processes are to be automatically monitored and categorized
• AI systems are to support medical staff in diagnostics

You will work on the Quantitative Biology & Smart Microscopy (R2) part of the project and will always be involved in our overall “Appl-FM” project. You will be directly supervised by the professors Dr. Simone Reber (BHT), Dr. Elisabeth Grohmann (BHT), and Dr. Erik Rodner (HTW). You can find more information on the websites https://www.mpiib-berlin.mpg.de/2152983/Quantitative-Biology and www.TheReberLab.com .

The research is carried out in close cooperation with the Max Planck Institute for Infection Biology and the Humboldt University of Berlin as academic partners. Simone Reber is also a faculty member of International Max Planck Research School for Infectious Diseases and Immunology (IMPRS-IDI), PhD students in her lab will have the opportunity to join this prestigious graduate program.

Responsibilities:

• Independent research in the field of “molecular mechanisms of cellular scaling”
• Cell culture, biochemistry, advanced light microscopy, image and data analysis
• Documentation, publication, and presentation of research results

Requirements:

• Completed scientific university degree (master or diploma) in the field of chemistry, biochemistry, biophysics, molecular biology, or a related discipline or equivalent qualification (submission of degree at the latest at the time of signing the employment contract)
• Very good knowledge of biochemistry and light microscopy
• Very good command of written and spoken English
• Ability to work independently and scientifically
• Strong organizational skills and sense of responsibility
• Experience in project management is desirable
• Enthusiasm, reliability, and flexibility
• Friendly and team-oriented appearance
• The opportunity to work in an experienced scientific team
• A workplace in the city center that is easily accessible by public transport
• External and internal training opportunities
• Company health management (including various sports courses)
• Family-friendly working hours through flexitime and mobile working
• 30 vacation days
• An open-minded and experienced team is looking forward to your reinforcement

Interested in joining us?

To apply, please submit your application with motivation letter, CV, transcripts, and two references until March 19th, 2024, via e‑mail to [email protected] .

How to apply

Application email: please sign in to view the email address.

Application deadline: Tuesday, 19 March 2024 (in 0 minutes).

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• Motivdaten_28042241__ET_20240219__X.pdf
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Humboldt-Universität zu Berlin

Phd studies, enrollment office for phd students.

The enrollment office will be closed from March 29, 2024 to April 2, 2024. We wish you a happy Easter!

• Office location:

Humboldt-Universität zu Berlin Referat Studierendenservice Unter den Linden 6 10117 Berlin

• Contact person:

Ms. Olga Vorobyeva

• E-mail: [email protected] *

Consultation hour by phone Wednesday 09:00 - 10:00 a.m. Phone: (+49) 30 2093-70330

*If you are already enrolled or registered at HU Berlin, please submit your full name, your enrollment or registration number, your date and place of birth.

If you are not aiming for a degree at HU and only want to complete a few semesters as part of your guest/research stay at HU , you cannot apply for enrollment at the enrollment office. Please contact the International Office with your questions regarding the enrollment process: [email protected]

I. Beginning your doctoral studies: Admission, enrollment and registration

Please find general information for doctoral candidates at the Humboldt-Universität zu Berlin (HU Berlin) on our Doctoral Candidates Portal .

Please contact the PhD office of the faculty at which you would like to do your doctorate. Notice that there are no fixed deadlines for applying as a doctoral candidate. You get all necessary information on the application procedure directly there. Please find corresponding contact details on the websites of the faculties .

Please submit your application for admission exclusively to the PhD office at the faculty of your choice. Your application must contain all specified documents. Please note, if you have a non German university degree, your documents will be checked for equivalence with the German education system before the application procedure. Any coordination that may be necessary for this process is carried out between the faculty’s PhD office and the department for student services internally. We kindly ask you, do not send any documents to the enrollment office for doctoral studies before you received your admission by the faculty of your choice.

Please submit the enrollment form for PhD studies [ PDF ] and all the required documents as soon as possible, but no later than four weeks after you received the letter of admission from your faculty. If you are employed at HU and prefer to be only registered, please choose the registration-form for a doctorate [ PDF ]. Please send the filled out and signed form with all required documents to the following address

Humboldt-Universität zu Berlin Referat Studierendenservice Unter den Linden 6 10099 Berlin

or drop them into the mailbox at the Student Service Center (SSC) in the main building of  Humboldt-Universität zu Berlin, Unter den Linden 6, 10117 Berlin (Opening hours: Mon - Fri, 8 a.m. - 7 p.m.).

To keep the four-week deadline for enrollment/registration it is sufficient to submit the documents during this period to the enrollment office for PhD students.

Enrollment forms submitted digitally (e.g. as e-mail attachments) cannot be accepted for your enrollment.

You can only enroll for PhD studies after you have received your formal admission in a doctoral-study-program from the PhD office/PhD board of your faculty.

Enrolled doctoral candidates do have a student status and receive a student card (Campus-Card) but cannot receive the semester ticket for public transport. Enrolled PhD students have to pay the semester fees. Enrollment as a doctoral candidate is not contingent upon employment as a staff member at the HU Berlin.

However, if you are employed at HU, you have two options:

Either you enroll or you register for PhD studies. Registration is only possible as long as you are an employee/staff member at the HU Berlin. In case of registration, no fees or contributions have to be paid. But you do not have a status of a student at the HU Berlin and you are excluded from using the discounted semester ticket.

Differences between enrollment and registration for PhD studies

Please enroll for PhD studies within four weeks after receiving the letter of admission from your faculty and submit the following documents:

- the completed and signed enrollment form [ PDF ] incl. details on your educational biography,

- a simple copy of your admission letter from the PhD board,

- the payment confirmation of the semester fee (e.g. a simple copy of the bank transfer). You will find detailed information about the amount of semester fee which has to be paid for your enrollment below under "How much semester fee do I have to pay to be enrolled for PhD studies?".

- a simple copy of the de-registration certificate from your last German university (does not apply if you have never been enrolled at a university in Germany),

- a simple copy of your university entrance qualification (in most cases the secondary school certificate and/or university entrance examination),

- simple copies of your previous university degree certificates (German and/or foreign certificates),

- proof of a scholarship (if applicable).

How much semester fee do I have to pay to be enrolled for PhD studies?

Enrollment for the winter semester 2023/24

Doctoral students have the opportunity to purchase the semester ticket for the months of February and March 2024 when enrolling for the winter semester 2023/24.

Please see this overview for the amount to be transferred for your enrollment:

Enrollment for the summer semester 2024 (01.04.2024 – 30.09.2024)

Starting from the summer semester of 2024, PhD students are not entitled to a semester ticket and are excluded from using the Germany semester ticket.

Please transfer the semester fee of €114.59 for your enrollment in the summer semester 2024.

When enrolling from the beginning of the re-registration period for the winter semester 2024/25 (in the months of June, July, August and September 2024), we ask you to transfer the semester fee for the winter semester 2024/25 as well.

Exemption from the enrollment fee (currently €50)

PhD students who receive a scholarship (e.g. from the DAAD) as part of funding programs that are financed exclusively or predominantly from public funds from the federal or state governments and who submit a proof of this for enrollment can be exempted from the fee for enrollment and re-registration, currently 50 € per semester, in accordance with Section 2 Paragraph 7 of the BerlHG ( § 2 Abs. 7 BerlHG ).

Please find detailed information about the composition of semester fees and contributions here:

https://hu.berlin/rueckmeldung

If you are employed at Humboldt-Universität zu Berlin and have chosen to register as a PhD student, please submit the following documents within four weeks after receiving the letter of admission from your faculty:

- the completed and signed application registration-form for PhD studies incl. details on your educational biography [ PDF ],

- a proof of employment at HU which contains the begin-date and the end-date of your employment (e.g. a copy of your employment contract),

- simple copies of your previous university degree certificates (either German and/or foreign certificates).

Please note that the enrollment office will not send you a confirmation that your documents have been received . The application deadline is met if your documents for enrollment or registration have reached the enrollment office within one month after your admission for PhD studies.

After we have received your documents, we will check them carefully. If any documents are missing, you will be informed by email or via mail and we will give you a deadline for submitting the missing evidence.

If you submitted all the required documents in full, you will receive a confirmation of completed enrollment/registration by e-mail. In addition, we will provide you with further information (in case of enrollment: e.g. how to create the Campus Card (student ID) or to activate the student HU account).

Please note that the processing of your application for enrollment or registration for PhD studies usually takes at least two weeks after the enrollment office has received all the required documents. Before the start of the semester or shortly after the semester start, there may be longer processing times.

II. During PhD studies: Re-registration, semester fees and semester ticket

Yes, re-registration for the next semester is mandatory. In order to retain your status as a doctoral student and to be able to complete your PhD studies, you must re-register within the re-registration period. Please note the information on the main deadlines for re-registration in your AGNES account and on our website for re-registration .

If you have appropriate reasons, you can apply for a leave of absence as a PhD student by using our application form [ PDF ]. For further information please visit our website .

However, the leave of absence has no influence on the standard processing time of your doctoral studies and your processing time will not be automatically extended for the duration of your leave of absence.

Please complete the extension form ("Bescheinigung über die Verlängerung der Regelbearbeitungszeit der Promotion" [ PDF ]) and have it signed by your PhD supervisor. Then send the signed form to the PhD office of your faculty. Please note that the PhD office may need additional documents from you. Contact the office for more information and procedure details.

If your request has been approved by the faculty’s PhD board, the PhD office will forward the signed form to the enrollment office for doctoral studies.

As a registration for PhD studies is only possible for the duration of your employment at the HU Berlin, you have to enroll as a PhD student after your employment relationship has expired. Please submit the application form for enrollment for PhD studies to the enrollment office. In addition, please submit a proof of payment of the semester fee, a proof of health insurance and an informal letter in which you inform us that you are currently registered for doctoral studies.

The amount of the semester fee depends on two factors:

Whether you want to use the semester ticket and on what date you enroll for PhD studies.

If you want to use the semester ticket and enroll within the first semester month (April or October), the full semester fee including the semester ticket fee must be paid.

If you enroll after the first month of the semester, the semester ticket fee only has to be paid proportionally from the month of enrollment.

If you opt out the semester ticket, the semester fee for the current semester is constant regardless of the month of enrollment.

If you enroll in the last three semester months (July-September or January-March), we ask you to transfer the re-registration fee for the following semester in addition to the semester fee for the matriculation semester.

Please try to re-activate your HU account for students via our Computer and Media Service (CMS) to solve this issue. If this is not possible, please contact the enrollment office for generating a new PIN letter for re-activating your HU account for students.

Please note that a new PIN can only provided via a PIN letter send to you by mail.

III. Finishing your doctoral studies, de-registration

If you do not re-register for the upcoming semester, .e.g. not paying the required semester fee, you will be automatically de-registered (“Exmatrikulation”). If you would like to be de-registered before the end of the semester, please submit the application for de-registration [ PDF ] to the enrollment office for doctoral studies.

Please contact the PhD office of your faculty and clarify whether the enrollment is necessary to defend your thesis and proceed accordingly. If the regular processing time for your doctorate has expired, and you have submitted your thesis and you need to be enrolled in the upcoming semester, ask the PhD office to inform the enrollment office about this. After the enrollment office has received the confirmation from the PhD office and your payment of the semester fee has been received, we will re-register you.

IV. Legal bases

Fächerübergreifende Satzung zur Regelung von Zulassung, Studium und Prüfung der Humboldt-Universität zu Berlin (ZSP-HU)

Sections 59 and 60 regulate form, procedure and conditions of enrollment and registration as a doctoral student at the Humboldt-Universität zu Berlin.

V. Additional information

Doctoral regulations of the faculties

https://hu.berlin/promord

Humboldt Graduate School

https://www.humboldt-graduate-school.de

International Scholar Services

https://hu.berlin/issprom

Financing the PhD studies

https://hu.berlin/promfinanz

https://www.daad.de

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PhD position (3 years, 65% E13) in ‘Bacterial cell biology’ at Humboldt University Berlin: Germany

Background/objectives: The Humboldt-Universität zu Berlin is one of eleven German universities that have been awarded the ‘University of Excellence’ status since 2012. Located at the Institute of Biology, our research group investigates fundamental, molecular mechanisms in bacterial cell biology. The model system of our research is a remarkably complex, self-assembling nanomachine: the bacterial flagellum of Salmonella enterica. Flagella mediate motility of Salmonella and are by far the most prominent extracellular structure known in bacteria. We use a combination of genetic engineering, biochemistry and quantitative fluorescent microscopy techniques to understand the genetic regulation, self-assembly and protein export mechanisms of this fascinating nanomachine.

In a consortium funded by the VolkswagenStiftung, we aim to elucidate fundamental principles of cell decision-making according to their intrinsic programming and in response to microenvironmental cues. In this PhD project, the selected candidate will test cell decision-making theory predictions in the context of phenotypic plasticity of flagella formation during bacterial cell division.

Requirements: – Master’s / Diploma degree in Biology, Bioinformatics, Biotechnology, Life Sciences or related fields – Experience in microbiology, microscopy, bioinformatics and/or bacterial genetics will be considered as an advantage – Knowledge of a scripting language and Python is a plus – Ability to work independently and as part of an international team – Highest motivation and excellent English communication skills (written and spoken)

Position: The position (65%, TV-L E13) is available immediately and funded for 36 months with the possibility of extension after evaluation. The Humboldt-Universität zu Berlin is an equal opportunity employer and welcomes the application of qualified female scientists. Equally qualified applicants with disabilities will be given preference. Applicants with migration background are particularly welcomed.

Application: Please send your application (reference number DR/049/20) including a letter of motivation, your curriculum vitae and the names of previous supervisors/referees in a single PDF document until April 24, 2020 to: marc.erhardt@hu-berlin.de

Please visit our website www.hu-berlin.de/stellenangebote, which gives you access to the legally binding German version.

Prof. Dr. Marc Erhardt Humboldt-Universität zu Berlin Institut für Biologie – Bakterienphysiologie Philippstr. 13 – Haus 22 10115 Berlin Web: www.baktphys.hu-berlin.de Twitter: @Salmo_Lab

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33 PhD/ Doktorand/in Positionen in Deutschland

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• PhD/ Doktorand/in Positionen in Köln (5)
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Andere Länder

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Suchergebnisse (33)

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31 PhD jobs in Germany

Find PhD jobs in Germany here. To have jobs sent to you the day they're posted, sign up for job alerts.

• PhD positions in Cologne (4)
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Other countries

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Search results (31)

PhD students (f/m/d) in Superconducting Qubits

Karlsruhe Institute of Technology (KIT) – The Research University in the Helmholtz Association creates and imparts knowledge for the society and the environment. It is our goal to make significant contributions to mastering the global challenges o...

Photonic Integrated classical/quantum transceiver for quantum communications (QuNEST Doctoral Candidate 9)

Research Programme Description “QuNEST– Quantum Enhanced Optical Communication Network Security Doctoral Training” is hiring 11  Doctorate Candidates to be funded by the Marie Skłodowska-Curie Actions (MSCA) Doctoral Networks. QuNEST is a highly i...

Fully Funded PhD Positions

The International Max Planck Research School on Cellular Biophysics (IMPRS-CBP) invites excellent graduate students in life sciences to apply forFully Funded PhD PositionsThe IMPRS-CBP is an international doctoral training program hosted by the Ma...

PhD Position – Automation of a High-Throughput Setup for Electrochemical Systems

Would you like to contribute to the energy transition in Germany through your work? Then the Helmholtz Institute Erlangen-Nürnberg (for Renewable Energy) (HI ERN) is the right place for you! The HI ERN forms the core of the close partnership betwe...

PhD Position – High-Throughput Electrochemical Characterization for Energy Applications

Would you like to contribute to the energy transition in Germany through your work? Then the Helmholtz Institute Erlangen-Nürnberg (for Renewable Energy) (HI ERN) is the right place for you! The HI ERN forms the core of the close partnership betwe...

Upcoming fully funded PhD Positions in Neurosciences and Translational Psychiatry research, including a residency/PhD track option for medical doctors

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Upcoming PhD Positions at the International Max Planck Research School for Molecules of Life in Autumn 2023

More information for the new call-out will come up during Autumn 2023. Stay tuned!The International Max Planck Research School for Molecules of Life (IMPRS-ML) will have an open call for fully-funded PhD student positions in the areas of biochemis...

Upcoming PhD positions at the CGA

Call for applications for up to 12 PhD positions at the Cologne Graduate School of Ageing Research opens soon! The Cologne Graduate School of Ageing Research (CGA) in Germany is a joint venture of the University of Cologne Excellence Cluster on St...

PhD Position (f/m/x) on non-equilibrium physics in quantum materials Wiss2404-01 | Institute of Physics II | Faculty of Mathematics and Natural Sciences

Faculty of Mathematics and Natural Sciences PhD Position (f/m/x) on non-equilibrium physics in quantum materials Institute of Physics II We are one of the largest and oldest universities in Europe ...

PhD Positions in Cancer Research

Are you looking for excellent research opportunities for your PhD studies at the forefront of cancer research? The German Cancer Research Center (DKFZ) in Heidelberg invites international students holding a Master’s degree in (molecular) biology, ...

PhD Researcher (f/m/x) – Investigating dissolved organic carbon quantity and quality in temperate headwaters for safe drinking water

The Helmholtz Centre for Environmental Research (UFZ) with its 1,100 employees has gained an excellent reputation as an international competence centre for environmental sciences. We are part of the largest scientific organisation in Germany, the ...

Research Group Leader / Early Career Scientist (m/f/x)

The Johann Wolfgang Goethe University Frankfurt am Main is one of the largest universities in Germany with around 44,000 students and with about 5,700 employees. Founded in 1914 by Frankfurt citizens and since 2008 once again proud of its foundati...

Upcoming PhD positions at the IMPRS for Molecular Organ Biology in Autumn 2024

Thanks to all the academics who submitted their application!The application deadline has passed and the selection process started. More information for the new call-out will come up during this Autumn 2024. Stay tuned!PhD Studies in the Heart of E...

Opportunity for doctoral research at UTN

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PhD Position, research assistant (f/m/d) on Thermomagnetic Foil Actuation

Research assistant (m/f/d) in the field of building materials science

Phd position – catalyst development in the department chemical hydrogen storage.

Would you like to contribute to the energy transition in Germany through your work? Then the Helmholtz Institute Erlangen-Nürnberg (for Renewable Energy) (HI ERN) is the right place for you! The HI ERN forms the core of the close partner­ship betw...

5 PhD positions in Molecular and Chemical Ecology and Evolution

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PhD Position (m/f/d) in the field of ADC converters

Job-ID: 5066/23 | Department: D-CD | Salary: as per tariff (TV-L) | Working Time: 40h/week (part-time work option) | Limitation: initially 2 years with option of extension for three more years | Starting Date: as soon as possibleIHP is an institut...

12 Full-time doctorate research fellowships (f/m/d)

In the “Ilmenau School of Green Electronics (ISGE)” funded by the Carl Zeiss Foundation at the Technische Universität Ilmenau (Germany) is a vacancy for12 Full-time doctorate research fellowships (f/m/d)from July 1st 2024..These PhD positions will...

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